![]() On Google Cloud, there is only the ```Homo_sapiens_assembl圓8.dbsnp138.vcf``` file. On the FTP there is the ```dbsnp_``` file and a folder name ‘beta’, which has ```Homo_sapiens_assembl圓8.``` and ```Homo_sapiens_assembl圓8.dbsnp138.vcf``` files. ![]() For the b37/hg19 builds, this file is named ```dbsnp_```/```dbsnp_```, while for the hg38 there are multiple versions: The second file I’m having issues with is the dbsnp file. Or should I just use ```Homo_sapiens_assembl圓8.known_indels.vcf``` together with the Mills database for hg38, and the other one for b37/hg19? Why is this second file not available for hg38, and can I just create it by liftovering from hg19? This file (in this shape, with this name pattern) is not available with the b37 and hg19 reference bundle, but rather this file is ```1000G_```/```1000G_.vcf```. One is the ```Homo_sapiens_assembl圓8.known_indels.vcf```. I’m currently having issues with 2 files, and I couldn’t find the explanations on your website anywhere. Namely, I’m trying to understand the hg38 files that you provide on your FTP vs the ones that you provide on Google Cloud. I have some questions about the GATK resource bundle. This discussion was created from comments split from: New to the forum? Ask your questions here!. For latest documentation and forum click here This information is only valid until Dec 31st 2019. IMPORTANT: This is the legacy GATK Forum discussions website.
0 Comments
Leave a Reply. |